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Commits on Jul 6, 2017

• [maven-release-plugin] prepare release biojava-4.2.8

  josemduarte

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• Fix for pom needed for release to be performed

  josemduarte

  committed
  d7d7a28

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• [maven-release-plugin] rollback the release of biojava-4.2.8

  josemduarte

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• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
  f7f5eec

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• [maven-release-plugin] prepare release biojava-4.2.8

  josemduarte

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• Merge pull request #682 from valasatava/bugfixes-4.2

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  josemduarte

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  1653b63

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• Merge pull request #683 from josemduarte/bugfixes-4.2

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  josemduarte

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• Better http than https

  josemduarte

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• Updating ligand URLs to latest RCSB convention

  josemduarte

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Commits on Jul 5, 2017

• Fixing test after remediation

  josemduarte

  committed
  42d628d

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• Updating to latest RCSB URL

  josemduarte

  committed
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• Updating dssp urls to latest RCSB convention

  josemduarte

  committed
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• Adding missing methods to the interface

  valasatava

  committed
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• Cherry-pick the c5fa135 commit

  valasatava

  committed
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Commits on Mar 8, 2017

• [maven-release-plugin]prepare for next development iteration

  

  Jenkins

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• [maven-release-plugin]prepare release biojava-4.2.7

  

  Jenkins

  committed
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Commits on Mar 7, 2017

• Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region

  

  Yana Valasatava

  authored and

  josemduarte

  committed
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• Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  authored and

  josemduarte

  committed
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• Chromosome mapping tool patch for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  authored and

  josemduarte

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• Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

  

  Yana Valasatava

  authored and

  josemduarte

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Commits on Mar 2, 2017

• Merge pull request #640 from josemduarte/bugfixes-4.2

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  andreasprlic

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• Bugfix: header was wrongly specified. Better error handling

  josemduarte

  committed
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Commits on Feb 18, 2017

• [maven-release-plugin]prepare for next development iteration

  

  Jenkins

  committed
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• [maven-release-plugin]prepare release biojava-4.2.6

  

  Jenkins

  committed
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• Catching empty coordinates earlier in quat sym detection

  josemduarte

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Commits on Feb 15, 2017

• Merge pull request #634 from sbliven/bugfixes-4.2

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  sbliven

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• Fix Quaternary symmetry symmetry detection bug

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  sbliven

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Commits on Feb 10, 2017

• Better rules for Quaternary symm self-alignments

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  sbliven

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Commits on Jan 21, 2017

• Now catching empty arrays in getCentroid

  josemduarte

  committed
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• Less verbose logging in AsaCalculator

  josemduarte

  committed
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• Better logging in symmetry package

  josemduarte

  committed
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• Fix for #631

  josemduarte

  committed
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• New test to demonstrate issue with cloning

  josemduarte

  committed
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Commits on Dec 7, 2016

• [maven-release-plugin]prepare for next development iteration

  

  Jenkins

  committed
  2a6ff38

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• [maven-release-plugin]prepare release biojava-4.2.5

  

  Jenkins

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