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onbiojava-4.2.11

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Commits on Mar 10, 2016

• Light cleanup:

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  sbliven

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• Running spacestotabs on recent changes

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Commits on Mar 9, 2016

• Merge branch 'master' into removeLoadChemCompInfo

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  josemduarte

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• Removing unused imports

  sbliven

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• Converting initial spaces to tabs.

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  sbliven

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• Remove trailing whitespace globally from .java files

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Commits on Mar 8, 2016

• Merge branch 'master' into removeLoadChemCompInfo

  josemduarte

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• Removing loadChemCompInfo, some tests don't pass yet

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Commits on Mar 4, 2016

• Fix #385. Support BIO: identifiers

  sbliven

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Commits on Mar 1, 2016

• fixing broken demo

  andreasprlic

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• this example was using the wrong Parameter class. fixed

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Commits on Feb 1, 2016

• Merge branch 'master' into cesymm

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  lafita

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Commits on Jan 31, 2016

• adding missing update

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Commits on Jan 27, 2016

• Remove DemoMultipleAlignmentJmol

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  lafita

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• Fixing demo after latest changes

  josemduarte

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Commits on Jan 26, 2016

• Merge branch 'master' into cesymm

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  lafita

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• #383 updating of demo scripts to new StructureIdentifier convention

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• #383 this unit test references code from the testing framework. Disabling for now.

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Commits on Jan 25, 2016

• Adapt SymmetryGUI to latest changes

  lafita

  committed
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Commits on Jan 14, 2016

• Add lectins as example of CECP multiple alignment

  lafita

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Commits on Dec 1, 2015

• Adding biojava license statements

  sbliven

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Commits on Nov 30, 2015

• Fix TestCeSymm failing

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  lafita

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• Fix broken CE-Symm Test

  lafita

  committed
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• Set the default minimum SSE per subunit to 2

  lafita

  committed
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• Filter symmetry by number of SSE

  lafita

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• Add and update CESymmParameters

  lafita

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Commits on Aug 13, 2015

• Disallow MC optimization in parallel

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  lafita

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Commits on Aug 7, 2015

• Unimplement StructureAlignment in CeSymm

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  lafita

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• Correct parameter in combined symmetry detection

  lafita

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Commits on Aug 6, 2015

• Clean warnings in structure-gui module

  lafita

  committed
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Commits on Aug 4, 2015

• Allow non-refined result, only self-alignment

  lafita

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• Fix demo issues

  lafita

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Commits on Aug 3, 2015

• Add Demo for CeSymm

  lafita

  committed
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Commits on Jul 24, 2015

• Fix bug with flexible MultipleAlignments

  lafita

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Commits on Jul 22, 2015

• Calc.transform() documentation and testing

  lafita

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