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Commits on Apr 5, 2017

• moving SIFTS unit test to parse local file, since file from remote location has changed (and seems to contain inconsistent data)

  andreasprlic

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Commits on Mar 29, 2017

• more precise comparison of parsing speed between mtf and pdb file formats

  andreasprlic

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  a216f92

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• Merge pull request #4 from andreasprlic/mmtf105

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  josemduarte

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• cleanup

  andreasprlic

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• new unit test that compares a slightly larger structure.

  andreasprlic

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• new version of test now only compares parsing in RAM

  andreasprlic

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• Updating test after file was remediated

  josemduarte

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• adding a parsing performance unit test for mmtf, that compares with pdb format parsing.

  andreasprlic

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Commits on Mar 22, 2017

• TestBond is updated to match the updated data in structure file used for test

  

  Yana Valasatava

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Commits on Jan 12, 2017

• The fix to the insertion code issue to is use the ResidueNumber object as the hash key instead of a string made from the residue number. Fixes bug where structures with insertion codes were likely…

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  Matt Larson

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Commits on Dec 22, 2016

• Issue 330: fixes for PDB Parser,

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  Matt Larson

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Commits on Nov 23, 2016

• Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.

  josemduarte

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Commits on Nov 22, 2016

• Implementing new crystallographic metadata fields.

  josemduarte

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• Implementing parsing of atom_sites category in mmcif parser/consumer

  josemduarte

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Commits on Nov 21, 2016

• Merge pull request #600 from sbliven/fix557

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  andreasprlic

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Commits on Nov 10, 2016

• Allow partial residue ranges (#557)

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  sbliven

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Commits on Nov 7, 2016

• Update to biojava 5.0 ligand and chain model

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  sbliven

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Commits on Oct 3, 2016

• Fix unit tests

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  sbliven

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• Add model-specific iteration over Groups and Atoms

  sbliven

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Commits on Sep 19, 2016

• TestSuperPosition now tests rmsd of non-centered points.

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  josemduarte

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• Merge branch 'svdsuperimpIssue' into superpose

  lafita

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• Fix bug in centroid calculation SuperPositionSVD #588

  lafita

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Commits on Sep 18, 2016

• Merge pull request #586 from josemduarte/fixBiounitTest

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  josemduarte

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• Merge branch 'master' into issue582

  josemduarte

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• Merge remote-tracking branch 'upstream/master' into fixBiounitTest

  josemduarte

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• More complete test

  josemduarte

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Commits on Sep 15, 2016

• Fixing hard biounits test. Small fix in Chain docs.

  josemduarte

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• Merge branch 'master' into issue582

  josemduarte

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• Merge branch 'master' into testAtomCacheParsingFlags

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  andreasprlic

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• Merge pull request #573 from josemduarte/issue572

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  andreasprlic

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Commits on Sep 14, 2016

• Issue #582 and some more work towards #545

  josemduarte

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Commits on Sep 12, 2016

• Remove tests that require String comparisons with floats

  lafita

  committed
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• Fix compilation errors from SuperPosition interface change #558

  lafita

  committed
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Commits on Sep 10, 2016

• fixing a bug with setting the file parsing type in AtomCache. (mmtf and mmcif flags were both always set to true)

  andreasprlic

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Commits on Sep 9, 2016

• Modifications from the SuperPosition changes w compile errors

  lafita

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