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Commits on Apr 5, 2017

• moving SIFTS unit test to parse local file, since file from remote location has changed (and seems to contain inconsistent data)

  andreasprlic

  committed
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Commits on Apr 4, 2017

• Refactoring FileDownload util to be a part of biojava-core project

  valasatava

  committed
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Commits on Mar 28, 2017

• Upgrading to mmtf 1.0.5

  josemduarte

  committed
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Commits on Mar 21, 2017

• Create a test for the new parameters of the SmithWaterman3Daligner #552

  lafita

  committed
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• Merge branch 'master' into smwatRmsd

  lafita

  committed
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Commits on Feb 18, 2017

• Catching early if the representative atom array is empty

  josemduarte

  committed
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Commits on Feb 15, 2017

• Removing some warnings from empty structure names

  sbliven

  committed
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• Merge branch 'bugfixes-4.2' into master

  sbliven

  committed
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• Fix Quaternary symmetry symmetry detection bug

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  sbliven

  committed
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Commits on Feb 10, 2017

• Better rules for Quaternary symm self-alignments

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  sbliven

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Commits on Feb 6, 2017

• Merge pull request #623 from andreasprlic/fix622

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  andreasprlic

  authored
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Commits on Jan 21, 2017

• Now catching empty arrays in getCentroid

  josemduarte

  committed
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• Now catching empty arrays in getCentroid

  josemduarte

  committed
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• Less verbose logging in AsaCalculator

  josemduarte

  committed
  fc2d368

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• Fix for #631

  josemduarte

  committed
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• Less verbose logging in AsaCalculator

  josemduarte

  committed
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• Better logging in symmetry package

  josemduarte

  committed
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• Fix for #631

  josemduarte

  committed
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Commits on Jan 13, 2017

• Set default max RMSD for SmWat3D high to maintain default behavior

  lafita

  committed
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• Add two more parameters to Smith-Wat3Daligner

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  lafita

  committed
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• Add methods to delete alignment column from an AFPChain

  lafita

  committed
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Commits on Jan 12, 2017

• The fix to the insertion code issue to is use the ResidueNumber object as the hash key instead of a string made from the residue number. Fixes bug where structures with insertion codes were likely…

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  Matt Larson

  committed
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Commits on Jan 11, 2017

• adding new size method to CCD, as an easy count for the nr. of ChemComps.

  andreasprlic

  committed
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• and another shortcut for lpeptidelinking

  andreasprlic

  committed
  219d39b

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• adding similar lookup table to ResidueType

  andreasprlic

  committed
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• now without (or few) loops

  andreasprlic

  committed
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Commits on Jan 10, 2017

• removing string quotation characters should not happen at this place.

  andreasprlic

  committed
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Commits on Dec 22, 2016

• Issue 330: fixes for PDB Parser,

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  Matt Larson

  committed
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Commits on Nov 23, 2016

• Adding non-standard sg check to pdb parser

  josemduarte

  committed
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• Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.

  josemduarte

  committed
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• Adding non-standard sg check to pdb parser

  josemduarte

  committed
  617d6ec

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• Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.

  josemduarte

  committed
  220737a

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• Now using the new fields from CrystalBuilder

  josemduarte

  committed
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• Now using the new fields from CrystalBuilder

  josemduarte

  committed
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Commits on Nov 22, 2016

• Some extra rare fields in atom_sites

  josemduarte

  committed
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