Better name

josemduarte · josemduarte · commit 2e15b611a4ac · 2016-03-02T22:42:44.000-08:00
diff --git a/biojava-structure/src/test/java/org/biojava/nbio/structure/io/TestParseMmCIFLigands.java b/biojava-structure/src/test/java/org/biojava/nbio/structure/io/TestParseMmCIFLigands.java
@@ -42,11 +42,11 @@ public void testLigandConnections()throws IOException, StructureException {
 		Structure sCif = StructureIO.getStructure("4HHB");
 
 		//Verify that we have all HEM atoms from the CIF file.
-		assertEquals( HEM_COUNT_4HHB, countUniqueAtomsInLigandGroups(sCif) );
+		assertEquals( HEM_COUNT_4HHB, countBondedAtomsInLigandGroups(sCif) );
 		
 	}
 	
-	private int countUniqueAtomsInLigandGroups(Structure s){
+	private int countBondedAtomsInLigandGroups(Structure s){
 
 		int count = 0;
 		
@@ -86,7 +86,7 @@ public void testMultipleConformations()throws IOException, StructureException {
 		
 		//Verify that we have all atoms from all conformations of the ligands
 		
-		assertEquals(ATOM_COUNT_3UCB, countUniqueAtomsInLigandGroups(sCif));
+		assertEquals(ATOM_COUNT_3UCB, countBondedAtomsInLigandGroups(sCif));
 	}
 
 }

Original file line number	Diff line number	Diff line change
`@@ -42,11 +42,11 @@ public void testLigandConnections()throws IOException, StructureException {`
`42`	`42`	`Structure sCif = StructureIO.getStructure("4HHB");`
`43`	`43`
`44`	`44`	`//Verify that we have all HEM atoms from the CIF file.`
`45`		`- assertEquals( HEM_COUNT_4HHB, countUniqueAtomsInLigandGroups(sCif) );`
	`45`	`+ assertEquals( HEM_COUNT_4HHB, countBondedAtomsInLigandGroups(sCif) );`
`46`	`46`
`47`	`47`	`}`
`48`	`48`
`49`		`- private int countUniqueAtomsInLigandGroups(Structure s){`
	`49`	`+ private int countBondedAtomsInLigandGroups(Structure s){`
`50`	`50`
`51`	`51`	`int count = 0;`
`52`	`52`
`@@ -86,7 +86,7 @@ public void testMultipleConformations()throws IOException, StructureException {`
`86`	`86`
`87`	`87`	`//Verify that we have all atoms from all conformations of the ligands`
`88`	`88`
`89`		`- assertEquals(ATOM_COUNT_3UCB, countUniqueAtomsInLigandGroups(sCif));`
	`89`	`+ assertEquals(ATOM_COUNT_3UCB, countBondedAtomsInLigandGroups(sCif));`
`90`	`90`	`}`
`91`	`91`
`92`	`92`	`}`