Add human-friendly toStrings for SSBond and LinkRecord

ucarion · ucarion · commit ff405872c0fc · 2013-08-12T15:34:53.000-07:00
diff --git a/biojava3-structure/src/main/java/org/biojava/bio/structure/SSBond.java b/biojava3-structure/src/main/java/org/biojava/bio/structure/SSBond.java
@@ -169,7 +169,23 @@ public String getResnum2() {
 	public void setResnum2(String resnum2) {
 		this.resnum2 = resnum2;
 	}
-
-
-
+	
+	@Override
+	public String toString() {
+		String s = "[SSBOND:\n";
+		
+		s += "Atom 1:\n";
+		s += "\tChain: " + chainID1 + "\n";
+		s += "\tResidue #: " + resnum1 + "\n";
+		s += "\tIns. Code: " + insCode1 + "\n";
+		
+		s += "Atom 2:\n";
+		s += "\tChain: " + chainID2 + "\n";
+		s += "\tResidue #: " + resnum2 + "\n";
+		s += "\tIns. Code: " + insCode2 + "\n";
+		
+		s += "]";
+		
+		return s;
+	}
 }
diff --git a/biojava3-structure/src/main/java/org/biojava/bio/structure/io/util/PDBTemporaryStorageUtils.java b/biojava3-structure/src/main/java/org/biojava/bio/structure/io/util/PDBTemporaryStorageUtils.java
@@ -112,5 +112,30 @@ public String getSym1() {
 		public String getSym2() {
 			return sym2;
 		}
+		
+		@Override
+		public String toString() {
+			String s = "[LINK Record:\n";
+			
+			s += "Atom 1:\n";
+			s += "\tName: " + name1 + "\n";
+			s += "\tAlt Loc: " + altLoc1 + "\n";
+			s += "\tRes name: " + resName1 + "\n";
+			s += "\tChain ID: " + chainID1 + "\n";
+			s += "\tRes Seq: " + resSeq1 + "\n";
+			s += "\tIns Code: " + iCode1 + "\n";
+			
+			s += "Atom 2:\n";
+			s += "\tName: " + name2 + "\n";
+			s += "\tAlt Loc: " + altLoc2 + "\n";
+			s += "\tRes name: " + resName2 + "\n";
+			s += "\tChain ID: " + chainID2 + "\n";
+			s += "\tRes Seq: " + resSeq2 + "\n";
+			s += "\tIns Code: " + iCode2 + "\n";
+			
+			s += "]";
+			
+			return s;
+		}
 	}
 }
