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Commits on Sep 15, 2016

• Merge branch 'master' of github.com:biojava/biojava

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• Cleanup whitespace

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• Merge pull request #573 from josemduarte/issue572

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  andreasprlic

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Commits on Sep 14, 2016

• Add constructors for the MMTFFilereader

  abradle

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• Added caching functionality for MMTF

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• Address jose comment on #558

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Commits on Sep 13, 2016

• Fix bug with dihedral axis calculation #558

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Commits on Sep 12, 2016

• Fix bug in superposeAndTransform method SuperPositions

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• Remove tests that require String comparisons with floats

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• Fix compilation errors from SuperPosition interface change #558

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• Port methods from Calc to new Matrices class #558

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Commits on Sep 9, 2016

• Modifications from the SuperPosition changes w compile errors

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• Modify test for all SuperPosition algorithms #558

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• Implement a static class with methods for superposition #558

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• All superposition algorithms implement the SuperPosition interface

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• Create the SuperPosition interface and abstract class #558

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• Rename SVD Superposition algorithm #558

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• Rename Class for quaternion-based superposition #558

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Commits on Sep 3, 2016

• Solving #572

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Commits on Sep 1, 2016

• Move long tests to the intergationtest package

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Commits on Aug 31, 2016

• Fix Calc centroid and center of mass documentation

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Commits on Aug 30, 2016

• Small fix TestQsAlign

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• Small change to SuperpositionQCP test

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• Merge branch 'master' into quatalign

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Commits on Aug 23, 2016

• Merge pull request #555 from andreasprlic/master

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  sbliven

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Commits on Aug 21, 2016

• TestMMcifOrganismParsing: Using enum rather than String for comparison.

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• SymmetryTools.getResetVal: Do not compare NaNs with ==, use

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Commits on Aug 19, 2016

• Addressing @josemduarte 's comment to change log level for method.

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Commits on Aug 18, 2016

• making output less verbose

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• making output less verbose

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• making output less verbose

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• setting default log level to warn

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• making output less verbose

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• making output less verbose

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• making output less verbose

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