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Andreas Prlic
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‎structure/alignment.md‎

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@@ -48,10 +48,15 @@ The Combinatorial Extension (CE) algorithm was originally developed by [Shindyal
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### Combinatorial Extension with Circular Permutation (CE-CP)
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This is a new variation of CE that can detect circular permutations in proteins.
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### FATCAT - rigid
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### FATCAR - flexible
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This is a Java implementation of the original FATCAT algorithm. [Yuzhen Ye & Adam Godzik in 2003] (http://bioinformatics.oxfordjournals.org/content/19/suppl_2/ii246.abstract)
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### FATCAT - flexible
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Just as FATCAT - rigid, a Java implementation of the original FATCAT algorithm.
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## Acknowledgements
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