merging with upstream

andreasprlic · andreasprlic · commit 5099a7e31b17 · 2014-06-29T21:49:34.000-07:00
diff --git a/structure/README.md b/structure/README.md
@@ -53,9 +53,12 @@ Chapter 12 - Bonds
 
 Chapter 13 - [Special Cases](special.md) 
 
+Chapter 14 - [Lists](lists.md) of PDB IDs and PDB [status information](lists.md).
 Chapter 14 - Working with representative subsets of PDB
 
 
+
+
 ### Author: 
 
 [Andreas Prli&#263;](https://github.com/andreasprlic)
diff --git a/structure/installation.md b/structure/installation.md
@@ -25,13 +25,13 @@ You can add the BioJava repository by adding the following XML to your project p
                         -->                        
                         <groupId>org.biojava</groupId>
                         <artifactId>biojava3-structure</artifactId>
-                        <version>3.0.8-SNAPSHOT</version>
+                        <version>3.0.8</version>
                 </dependency>
                 <!-- if you want to use the visualisation tools you need also this one: -->
                 <dependency>                                         
                         <groupId>org.biojava</groupId>
                         <artifactId>biojava3-structure-gui</artifactId>
-                        <version>3.0.8-SNAPSHOT</version>
+                        <version>3.0.8</version>
                 </dependency>
                 <!-- other biojava jars as needed -->
         </dependencies> 
diff --git a/structure/lists.md b/structure/lists.md
@@ -0,0 +1,21 @@
+# Lists of PDB IDs and PDB Status Information
+
+## Get a list of all current PDB IDs
+
+The following code connects to one of the PDB servers and fetches a list of all current PDB IDs.
+
+```java
+    SortedSet<String> currentPDBIds = PDBStatus.getCurrentPDBIds();
+```     
+
+## The current status of a PDB entry
+
+The following provides information about the status of a PDB entry
+
+```java
+    Status status = PDBStatus.getStatus("4hhb");
+
+    // get the current ID for an obsolete entry
+    String currentID = PDBStatus.getCurrent("1hhb"); 
+```   
+
