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Commits on Nov 30, 2016

• addressing requested changes re. throwing exceptions.

  andreasprlic

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  4c6c348

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• moving to Java 7

  andreasprlic

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• now also accepting old header line

  andreasprlic

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• #610 switching test to junit version 4

  andreasprlic

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Commits on Nov 29, 2016

• creating local dir, if it does not exist.

  andreasprlic

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• fix for #610

  andreasprlic

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Commits on Jun 14, 2016

• merging in latest ptm modifications from master branch

  pwrose

  committed
  8b08584

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• Updating ptm list.

  pwrose

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Commits on Jun 10, 2016

• Reverting some changes to be compliant with the "old" way of doing chain IDs.

  andreasprlic

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• merging in updated ptm_list.xml

  andreasprlic

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• merging in updated ptm_list.xml

  andreasprlic

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• merging in updated ptm_list.xml

  andreasprlic

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• distance have to be looked up by element name, not atom name

  andreasprlic

  committed
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• Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.

  andreasprlic

  committed
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• merging in fixes related to PTMs into bug fix branch

  andreasprlic

  committed
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Commits on Mar 10, 2016

• Light cleanup:

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  sbliven

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  38fbae1

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• Running spacestotabs on recent changes

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  sbliven

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Commits on Mar 9, 2016

• Merge branch 'master' into removeLoadChemCompInfo

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  josemduarte

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  d1b5c48

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• More whitespace fixes

  sbliven

  committed
  af59f90

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• Converting initial spaces to tabs.

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  sbliven

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• Remove trailing whitespace globally from .java files

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  sbliven

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Commits on Mar 8, 2016

• Removing loadChemCompInfo, some tests don't pass yet

  josemduarte

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Commits on Oct 6, 2015

• Converting all line endings to Unix.

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  sbliven

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Commits on Jan 30, 2015

• more updates of wrong resource paths

  andreasprlic

  committed
  f21dec3

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• updating some hard coded paths

  andreasprlic

  committed
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• Refactoring of all package names according to #245 #242 #240

  andreasprlic

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Commits on Jan 29, 2015

• Ran Optimize Imports across the whole project.

  andreasprlic

  committed
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• Major refactoring of package names in accordance with #245 #242 #240

  andreasprlic

  committed
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