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Commits on Jan 25, 2020

• Merge pull request #859 from josemduarte/optimise-sym-mates-clusterer

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Commits on Jan 22, 2020

• Docs, a new StructureTools method and a new performance test (ignored)

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• Small optimization

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• More checks and a warning in case no aligned atoms found. Also a few minor fixes

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• Some improvements

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Commits on Jan 21, 2020

• Fixing the cluster by entity id alignment issue. Now tests pass

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• Now testing for subunit clustering with entity ids

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• Right order of params

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• New test

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Commits on Jan 20, 2020

• Extracting method in test

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Commits on Jan 12, 2020

• Merge pull request #857 from josemduarte/optimise-sym-mates-clusterer

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• Increasing the default num cells to explore in crystal reconstruction

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Commits on Jan 7, 2020

• Using mergeIdentical breaks a test, reverting

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• Reverted change that caused TestQsAlignExamples to fail

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Commits on Jan 5, 2020

• Introduced optimization: now if switch is provided subunit clustering uses entity id infor.

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Commits on Dec 27, 2019

• Extracting duplicate code to a method. Some cleanups

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Commits on Dec 12, 2019

• Logging, cleanups, cosmetics

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Commits on Nov 13, 2019

• Docs

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• Consolidating on a single method call for all alt loc bond business

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• Extracted common method, now covering nucleotide bonds

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• Covering another alt loc bond edge case

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Commits on Nov 12, 2019

• Clarifying docs and some more cleanup

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• Now all tests pass

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Commits on Nov 10, 2019

• Extending test

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• Fixing issue: no bonds between different altloc atoms

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Commits on Sep 6, 2019

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-5.3.0

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Commits on Sep 3, 2019

• Latest mmtf-java and cif-tools-java

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• Fixing test and clean up

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• Better solution

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Commits on Sep 2, 2019

• New test for #792

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• Fixing #671

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• Fixing potential bug

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• More cosmetics

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• Cosmetics

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