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Commits on Jul 11, 2022

• Merge pull request #1029 from marty-rabens/prevent-XXE-processing

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  josemduarte

  authored
  059fbf1

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Commits on Jul 6, 2022

• Added test for issue #886

  

  jamesmorris

  authored and

  jamesmorris

  committed
  008595b

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• Fixed issue #886 by escaping percent symbols when feature attributes are

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  jamesmorris

  authored and

  jamesmorris

  committed
  152ea74

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Commits on Jun 20, 2022

• Prevent XXE processing in XMLHelper

  marty-rabens

  authored
  1c94548

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Commits on Jan 5, 2022

• Merge pull request #998 from richarda23/#944-testcoverage

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  josemduarte

  authored
  a16d533

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Commits on Jan 3, 2022

• address PR comment

  

  otter606

  authored and

  heuermh

  committed
  0df9cca

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• fixes #1008

  

  otter606

  authored and

  heuermh

  committed
  9e44b24

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• test MSA

  otter606

  committed
  3c045a7

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• remove duplicate generics

  otter606

  committed
  4b33b8f

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• tidy up RNASeqTest

  otter606

  committed
  570fdac

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• simplify generics in RNASequence

  otter606

  committed
  c1a114f

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Commits on Jan 2, 2022

• Strand unit test, taxonomyID unit test

  otter606

  committed
  91f4e4c

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• Strand unit test

  otter606

  committed
  76c3bd4

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• fix deprecated assertions

  otter606

  committed
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Commits on Dec 2, 2021

• Changing new line delimiters to \\R

  aalhossary

  committed
  126f4ec

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Commits on Nov 27, 2021

• Correct EOL RegEx for both Windows and Linux

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  aalhossary

  committed
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Commits on Nov 26, 2021

• fix mutable collections in GeneSequence

  otter606

  committed
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Commits on Nov 25, 2021

• add accessionID as a constructor argument

  otter606

  committed
  0e2e841

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• initialise sequrnce storage, throwing IAE

  otter606

  committed
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Commits on Nov 21, 2021

• tests for transcript sequence

  otter606

  committed
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Commits on Nov 19, 2021

• test that breaks encapsulation of collections

  otter606

  committed
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Commits on Nov 18, 2021

• testing exon/intron addition

  otter606

  committed
  73a56e8

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• reduce risk of NPE

  otter606

  committed
  b787ea3

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• fix typo in message

  otter606

  committed
  3ddfb23

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• docs/formatting; GeneSequenceTest

  otter606

  committed
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Commits on Nov 17, 2021

• unit tests for chromosome sequence

  otter606

  committed
  9ca7435

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Commits on Nov 16, 2021

• add license to new files

  otter606

  committed
  28c07c6

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• turn exception to IAE

  otter606

  committed
  1eaa00b

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• convert old main method for insdbcparser to junit

  otter606

  committed
  794de2c

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• formatting/ self review

  otter606

  committed
  8aec708

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Commits on Nov 15, 2021

• move uncompressinputstream main into demo class

  otter606

  committed
  362a102

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• move ProteinSequence main to junit

  otter606

  committed
  43a533a

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• move CasePreservingProteinSequenceCreator main to junit

  otter606

  committed
  c3700d5

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• remove FastaReader main

  otter606

  committed
  3cc7e87

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• remove FastaWriter main

  otter606

  committed
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