-
Notifications
You must be signed in to change notification settings - Fork 15
Expand file tree
/
Copy pathinternal.hpp
More file actions
543 lines (507 loc) · 26.7 KB
/
internal.hpp
File metadata and controls
543 lines (507 loc) · 26.7 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
#pragma once
#include <cstddef>
#include <iostream>
#include <limits>
namespace nthash {
inline void
raise_warning(const std::string& class_name, const std::string& msg)
{
std::cerr << "[ntHash::" << class_name << "] \33[33mWARNING: \33[0m" << msg
<< std::endl;
}
inline void
raise_error(const std::string& class_name, const std::string& msg)
{
std::cerr << "[ntHash::" << class_name << "] \33[31mERROR: \33[0m" << msg
<< std::endl;
std::exit(1); // NOLINT(concurrency-mt-unsafe)
}
template<typename T>
inline T
canonical(const T fwd, const T rev)
{
return fwd + rev;
}
static_assert(std::numeric_limits<uint64_t>::max() + 1 == 0,
"Integers don't overflow on this platform which is necessary for "
"ntHash canonical hash computation.");
/**
* Split a 64-bit word into 33 and 31-bit sub-words and left-rotate them
* separately.
* @param x A 64-bit unsigned integer
* @return Split-rotation result
*/
inline uint64_t
srol(const uint64_t x)
{
uint64_t m = ((x & 0x8000000000000000ULL) >> 30) | // NOLINT
((x & 0x100000000ULL) >> 32); // NOLINT
return ((x << 1) & 0xFFFFFFFDFFFFFFFFULL) | m; // NOLINT
}
/**
* Split a 64-bit word into 33 and 31-bit sub-words and left-rotate them
* separately multiple times.
* @param x A 64-bit unsigned integer
* @param d Number of rotations
* @return Split-rotation result
*/
inline uint64_t
srol(const uint64_t x, const unsigned d)
{
if (d == 0) {
return x;
}
uint64_t v = (x << d) | (x >> (64 - d)); // NOLINT
uint64_t y = (v ^ (v >> 33)) & // NOLINT
(std::numeric_limits<uint64_t>::max() >> (64 - d)); // NOLINT
return v ^ (y | (y << 33)); // NOLINT
}
/**
* Get the pre-computed result of srol for a specific base.
* @param c The character as an unsigned char
* @param d Number of rotations
* @return Split-rotation result
*/
inline uint64_t
srol_table(unsigned char c, unsigned d);
/**
* Split a 64-bit word into 33 and 31-bit sub-words and right-rotate them
* separately.
* @param x A 64-bit unsigned integer
* @return Split-rotation result
*/
inline uint64_t
sror(const uint64_t x)
{
uint64_t m = ((x & 0x200000000ULL) << 30) | ((x & 1ULL) << 32); // NOLINT
return ((x >> 1) & 0xFFFFFFFEFFFFFFFFULL) | m; // NOLINT
}
// shift for generating multiple hash values
const int MULTISHIFT = 27;
// seed for generating multiple hash values
const uint64_t MULTISEED = 0x90b45d39fb6da1fa;
/**
* Extend hash array using a base hash value.
* @param fwd_hash Forward hash value
* @param rev_hash Reverse hash value
* @param k k-mer size
* @param h Size of the resulting hash array (number of extra hashes minus one)
* @param h_val Array of size h for storing the output hashes
*/
inline void
extend_hashes(uint64_t fwd_hash,
uint64_t rev_hash,
unsigned k,
unsigned h,
uint64_t* hash_array)
{
uint64_t t_val;
hash_array[0] = canonical(fwd_hash, rev_hash);
for (unsigned i = 1; i < h; i++) {
t_val = hash_array[0] * (i ^ k * MULTISEED);
t_val ^= t_val >> MULTISHIFT;
hash_array[i] = t_val;
}
}
// offset for the complement base in the random seeds table
const uint8_t CP_OFF = 0x07;
// 64-bit random seeds corresponding to bases and their complements
const uint64_t SEED_A = 0x3c8bfbb395c60474;
const uint64_t SEED_C = 0x3193c18562a02b4c;
const uint64_t SEED_G = 0x20323ed082572324;
const uint64_t SEED_T = 0x295549f54be24456;
const uint64_t SEED_N = 0x0000000000000000;
const int ASCII_SIZE = 256;
const uint64_t SEED_TAB[ASCII_SIZE] = {
SEED_N, SEED_T, SEED_N, SEED_G, SEED_A, SEED_A, SEED_N, SEED_C, // 0..7
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 8..15
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 16..23
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 24..31
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 32..39
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 40..47
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 48..55
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 56..63
SEED_N, SEED_A, SEED_N, SEED_C, SEED_N, SEED_N, SEED_N, SEED_G, // 64..71
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 72..79
SEED_N, SEED_N, SEED_N, SEED_N, SEED_T, SEED_T, SEED_N, SEED_N, // 80..87
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 88..95
SEED_N, SEED_A, SEED_N, SEED_C, SEED_N, SEED_N, SEED_N, SEED_G, // 96..103
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 104..111
SEED_N, SEED_N, SEED_N, SEED_N, SEED_T, SEED_T, SEED_N, SEED_N, // 112..119
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 120..127
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 128..135
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 136..143
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 144..151
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 152..159
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 160..167
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 168..175
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 176..183
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 184..191
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 192..199
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 200..207
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 208..215
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 216..223
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 224..231
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 232..239
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, // 240..247
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N // 248..255
};
const uint64_t A33R[33] = {
0x195c60474, 0x12b8c08e9, 0x571811d3, 0xae3023a6, 0x15c60474c, 0xb8c08e99,
0x171811d32, 0xe3023a65, 0x1c60474ca, 0x18c08e995, 0x11811d32b, 0x3023a657,
0x60474cae, 0xc08e995c, 0x1811d32b8, 0x1023a6571, 0x474cae3, 0x8e995c6,
0x11d32b8c, 0x23a65718, 0x474cae30, 0x8e995c60, 0x11d32b8c0, 0x3a657181,
0x74cae302, 0xe995c604, 0x1d32b8c08, 0x1a6571811, 0x14cae3023, 0x995c6047,
0x132b8c08e, 0x6571811d, 0xcae3023a
};
const uint64_t A31L[31] = {
0x3c8bfbb200000000, 0x7917f76400000000, 0xf22feec800000000,
0xe45fdd9200000000, 0xc8bfbb2600000000, 0x917f764e00000000,
0x22feec9e00000000, 0x45fdd93c00000000, 0x8bfbb27800000000,
0x17f764f200000000, 0x2feec9e400000000, 0x5fdd93c800000000,
0xbfbb279000000000, 0x7f764f2200000000, 0xfeec9e4400000000,
0xfdd93c8a00000000, 0xfbb2791600000000, 0xf764f22e00000000,
0xeec9e45e00000000, 0xdd93c8be00000000, 0xbb27917e00000000,
0x764f22fe00000000, 0xec9e45fc00000000, 0xd93c8bfa00000000,
0xb27917f600000000, 0x64f22fee00000000, 0xc9e45fdc00000000,
0x93c8bfba00000000, 0x27917f7600000000, 0x4f22feec00000000,
0x9e45fdd800000000
};
const uint64_t C33R[33] = {
0x162a02b4c, 0xc5405699, 0x18a80ad32, 0x115015a65, 0x2a02b4cb, 0x54056996,
0xa80ad32c, 0x15015a658, 0xa02b4cb1, 0x140569962, 0x80ad32c5, 0x1015a658a,
0x2b4cb15, 0x569962a, 0xad32c54, 0x15a658a8, 0x2b4cb150, 0x569962a0,
0xad32c540, 0x15a658a80, 0xb4cb1501, 0x169962a02, 0xd32c5405, 0x1a658a80a,
0x14cb15015, 0x9962a02b, 0x132c54056, 0x658a80ad, 0xcb15015a, 0x1962a02b4,
0x12c540569, 0x58a80ad3, 0xb15015a6
};
const uint64_t C31L[31] = {
0x3193c18400000000, 0x6327830800000000, 0xc64f061000000000,
0x8c9e0c2200000000, 0x193c184600000000, 0x3278308c00000000,
0x64f0611800000000, 0xc9e0c23000000000, 0x93c1846200000000,
0x278308c600000000, 0x4f06118c00000000, 0x9e0c231800000000,
0x3c18463200000000, 0x78308c6400000000, 0xf06118c800000000,
0xe0c2319200000000, 0xc184632600000000, 0x8308c64e00000000,
0x6118c9e00000000, 0xc23193c00000000, 0x1846327800000000,
0x308c64f000000000, 0x6118c9e000000000, 0xc23193c000000000,
0x8463278200000000, 0x8c64f0600000000, 0x118c9e0c00000000,
0x23193c1800000000, 0x4632783000000000, 0x8c64f06000000000,
0x18c9e0c200000000
};
const uint64_t G33R[33] = {
0x82572324, 0x104ae4648, 0x95c8c91, 0x12b91922, 0x25723244, 0x4ae46488,
0x95c8c910, 0x12b919220, 0x57232441, 0xae464882, 0x15c8c9104, 0xb9192209,
0x172324412, 0xe4648825, 0x1c8c9104a, 0x191922095, 0x12324412b, 0x46488257,
0x8c9104ae, 0x11922095c, 0x324412b9, 0x64882572, 0xc9104ae4, 0x1922095c8,
0x124412b91, 0x48825723, 0x9104ae46, 0x122095c8c, 0x4412b919, 0x88257232,
0x1104ae464, 0x2095c8c9, 0x412b9192
};
const uint64_t G31L[31] = {
0x20323ed000000000, 0x40647da000000000, 0x80c8fb4000000000,
0x191f68200000000, 0x323ed0400000000, 0x647da0800000000,
0xc8fb41000000000, 0x191f682000000000, 0x323ed04000000000,
0x647da08000000000, 0xc8fb410000000000, 0x91f6820200000000,
0x23ed040600000000, 0x47da080c00000000, 0x8fb4101800000000,
0x1f68203200000000, 0x3ed0406400000000, 0x7da080c800000000,
0xfb41019000000000, 0xf682032200000000, 0xed04064600000000,
0xda080c8e00000000, 0xb410191e00000000, 0x6820323e00000000,
0xd040647c00000000, 0xa080c8fa00000000, 0x410191f600000000,
0x820323ec00000000, 0x40647da00000000, 0x80c8fb400000000,
0x10191f6800000000
};
const uint64_t T33R[33] = {
0x14be24456, 0x97c488ad, 0x12f89115a, 0x5f1222b5, 0xbe24456a, 0x17c488ad4,
0xf89115a9, 0x1f1222b52, 0x1e24456a5, 0x1c488ad4b, 0x189115a97, 0x11222b52f,
0x24456a5f, 0x488ad4be, 0x9115a97c, 0x1222b52f8, 0x4456a5f1, 0x88ad4be2,
0x1115a97c4, 0x22b52f89, 0x456a5f12, 0x8ad4be24, 0x115a97c48, 0x2b52f891,
0x56a5f122, 0xad4be244, 0x15a97c488, 0xb52f8911, 0x16a5f1222, 0xd4be2445,
0x1a97c488a, 0x152f89115, 0xa5f1222b
};
const uint64_t T31L[31] = {
0x295549f400000000, 0x52aa93e800000000, 0xa55527d000000000,
0x4aaa4fa200000000, 0x95549f4400000000, 0x2aa93e8a00000000,
0x55527d1400000000, 0xaaa4fa2800000000, 0x5549f45200000000,
0xaa93e8a400000000, 0x5527d14a00000000, 0xaa4fa29400000000,
0x549f452a00000000, 0xa93e8a5400000000, 0x527d14aa00000000,
0xa4fa295400000000, 0x49f452aa00000000, 0x93e8a55400000000,
0x27d14aaa00000000, 0x4fa2955400000000, 0x9f452aa800000000,
0x3e8a555200000000, 0x7d14aaa400000000, 0xfa29554800000000,
0xf452aa9200000000, 0xe8a5552600000000, 0xd14aaa4e00000000,
0xa295549e00000000, 0x452aa93e00000000, 0x8a55527c00000000,
0x14aaa4fa00000000
};
const uint64_t N33R[33] = { SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N };
const uint64_t N31L[31] = { SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N, SEED_N, SEED_N, SEED_N, SEED_N, SEED_N,
SEED_N };
const uint64_t* const MS_TAB_33R[ASCII_SIZE] = {
N33R, T33R, N33R, G33R, A33R, A33R, N33R, C33R, // 0..7
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 8..15
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 16..23
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 24..31
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 32..39
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 40..47
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 48..55
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 56..63
N33R, A33R, N33R, C33R, N33R, N33R, N33R, G33R, // 64..71
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 72..79
N33R, N33R, N33R, N33R, T33R, T33R, N33R, N33R, // 80..87
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 88..95
N33R, A33R, N33R, C33R, N33R, N33R, N33R, G33R, // 96..103
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 104..111
N33R, N33R, N33R, N33R, T33R, T33R, N33R, N33R, // 112..119
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 120..127
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 128..135
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 136..143
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 144..151
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 152..159
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 160..167
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 168..175
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 176..183
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 184..191
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 192..199
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 200..207
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 208..215
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 216..223
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 224..231
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 232..239
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R, // 240..247
N33R, N33R, N33R, N33R, N33R, N33R, N33R, N33R // 248..255
};
const uint64_t* const MS_TAB_31L[ASCII_SIZE] = {
N31L, T31L, N31L, G31L, A31L, A31L, N31L, C31L, // 0..7
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 8..15
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 16..23
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 24..31
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 32..39
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 40..47
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 48..55
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 56..63
N31L, A31L, N31L, C31L, N31L, N31L, N31L, G31L, // 64..71
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 72..79
N31L, N31L, N31L, N31L, T31L, T31L, N31L, N31L, // 80..87
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 88..95
N31L, A31L, N31L, C31L, N31L, N31L, N31L, G31L, // 96..103
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 104..111
N31L, N31L, N31L, N31L, T31L, T31L, N31L, N31L, // 112..119
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 120..127
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 128..135
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 136..143
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 144..151
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 152..159
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 160..167
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 168..175
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 176..183
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 184..191
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 192..199
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 200..207
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 208..215
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 216..223
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 224..231
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 232..239
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L, // 240..247
N31L, N31L, N31L, N31L, N31L, N31L, N31L, N31L // 248..255
};
inline uint64_t
srol_table(unsigned char c, unsigned d)
{
return (MS_TAB_31L[c][d < 31 ? d : d % 31] | /* NOLINT */
MS_TAB_33R[c][d < 33 ? d : d % 33]); /* NOLINT */
}
const uint8_t CONVERT_TAB[ASCII_SIZE] = {
255, 255, 255, 255, 255, 255, 255, 255, // 0..7
255, 255, 255, 255, 255, 255, 255, 255, // 8..15
255, 255, 255, 255, 255, 255, 255, 255, // 16..23
255, 255, 255, 255, 255, 255, 255, 255, // 24..31
255, 255, 255, 255, 255, 255, 255, 255, // 32..39
255, 255, 255, 255, 255, 255, 255, 255, // 40..47
255, 255, 255, 255, 255, 255, 255, 255, // 48..55
255, 255, 255, 255, 255, 255, 255, 255, // 56..63
255, 0, 255, 1, 255, 255, 255, 2, // 64..71
255, 255, 255, 255, 255, 255, 255, 255, // 72..79
255, 255, 255, 255, 3, 3, 255, 255, // 80..87
255, 255, 255, 255, 255, 255, 255, 255, // 88..95
255, 0, 255, 1, 255, 255, 255, 2, // 96..103
255, 255, 255, 255, 255, 255, 255, 255, // 104..111
255, 255, 255, 255, 3, 3, 255, 255, // 112..119
255, 255, 255, 255, 255, 255, 255, 255, // 120..127
255, 255, 255, 255, 255, 255, 255, 255, // 128..135
255, 255, 255, 255, 255, 255, 255, 255, // 136..143
255, 255, 255, 255, 255, 255, 255, 255, // 144..151
255, 255, 255, 255, 255, 255, 255, 255, // 152..159
255, 255, 255, 255, 255, 255, 255, 255, // 160..167
255, 255, 255, 255, 255, 255, 255, 255, // 168..175
255, 255, 255, 255, 255, 255, 255, 255, // 176..183
255, 255, 255, 255, 255, 255, 255, 255, // 184..191
255, 255, 255, 255, 255, 255, 255, 255, // 192..199
255, 255, 255, 255, 255, 255, 255, 255, // 200..207
255, 255, 255, 255, 255, 255, 255, 255, // 208..215
255, 255, 255, 255, 255, 255, 255, 255, // 216..223
255, 255, 255, 255, 255, 255, 255, 255, // 224..231
255, 255, 255, 255, 255, 255, 255, 255, // 232..239
255, 255, 255, 255, 255, 255, 255, 255, // 240..247
255, 255, 255, 255, 255, 255, 255, 255 // 248..255
};
const uint8_t RC_CONVERT_TAB[ASCII_SIZE] = {
255, 255, 255, 255, 255, 255, 255, 255, // 0..7
255, 255, 255, 255, 255, 255, 255, 255, // 8..15
255, 255, 255, 255, 255, 255, 255, 255, // 16..23
255, 255, 255, 255, 255, 255, 255, 255, // 24..31
255, 255, 255, 255, 255, 255, 255, 255, // 32..39
255, 255, 255, 255, 255, 255, 255, 255, // 40..47
255, 255, 255, 255, 255, 255, 255, 255, // 48..55
255, 255, 255, 255, 255, 255, 255, 255, // 56..63
255, 3, 255, 2, 255, 255, 255, 1, // 64..71
255, 255, 255, 255, 255, 255, 255, 255, // 72..79
255, 255, 255, 255, 0, 0, 255, 255, // 80..87
255, 255, 255, 255, 255, 255, 255, 255, // 88..95
255, 3, 255, 2, 255, 255, 255, 1, // 96..103
255, 255, 255, 255, 255, 255, 255, 255, // 104..111
255, 255, 255, 255, 0, 0, 255, 255, // 112..119
255, 255, 255, 255, 255, 255, 255, 255, // 120..127
255, 255, 255, 255, 255, 255, 255, 255, // 128..135
255, 255, 255, 255, 255, 255, 255, 255, // 136..143
255, 255, 255, 255, 255, 255, 255, 255, // 144..151
255, 255, 255, 255, 255, 255, 255, 255, // 152..159
255, 255, 255, 255, 255, 255, 255, 255, // 160..167
255, 255, 255, 255, 255, 255, 255, 255, // 168..175
255, 255, 255, 255, 255, 255, 255, 255, // 176..183
255, 255, 255, 255, 255, 255, 255, 255, // 184..191
255, 255, 255, 255, 255, 255, 255, 255, // 192..199
255, 255, 255, 255, 255, 255, 255, 255, // 200..207
255, 255, 255, 255, 255, 255, 255, 255, // 208..215
255, 255, 255, 255, 255, 255, 255, 255, // 216..223
255, 255, 255, 255, 255, 255, 255, 255, // 224..231
255, 255, 255, 255, 255, 255, 255, 255, // 232..239
255, 255, 255, 255, 255, 255, 255, 255, // 240..247
255, 255, 255, 255, 255, 255, 255, 255 // 248..255
};
const uint64_t DIMER_TAB[4 * 4] = {
5015898201438948509U, 5225361804584821669U, 6423762225589857229U,
5783394398799547583U, 6894017875502584557U, 5959461383092338133U,
4833978511655400893U, 5364573296520205007U, 9002561594443973180U,
8212239310050454788U, 6941810030513055084U, 7579897184553533982U,
7935738758488558809U, 7149836515649299425U, 8257540373175577481U,
8935100007508790523U
};
const uint64_t TRIMER_TAB[4 * 4 * 4] = {
13237172352163388750U, 13451082378889146998U, 12324706752351386142U,
11704099346423635308U, 12503002411303846718U, 11573033083854154758U,
12770611021816489070U, 13284814289517544220U, 10286336837755622383U,
9500434588327378135U, 10554658215321236671U, 11177611689138066381U,
11245073286936829194U, 10454751004568891954U, 9274956656780491354U,
9930495270120774952U, 9498947889754972591U, 10289371588586147479U,
11487222103436658431U, 10812501148518244749U, 11088845979783725023U,
10735249574334615783U, 9609199230360475791U, 10105458452942995453U,
13447889238169808654U, 13238535845420384310U, 11968673763542288478U,
12645600078955589420U, 12136759312206930411U, 11922809957208297171U,
13031072242070652603U, 13668666814620918217U, 14219262150204358668U,
14433136993975185204U, 15703263506252408668U, 15026899868095529006U,
16097136083696541308U, 15167201938128040260U, 14113514427211577644U,
14608043031429815902U, 18169629015343943341U, 17383691583363408277U,
16185576633819064829U, 16859734366019948175U, 17215452794964541512U,
16425095330967072624U, 17460550829194815256U, 18101973914136232042U,
16197524846324948423U, 17136496960994620159U, 18190301010467109527U,
17660752969549176293U, 18084590689685816247U, 17861669045228104847U,
16591430392433501415U, 17233003275094786965U, 15689030113991676774U,
15321980360070757470U, 14196301091602199606U, 14727918144983470916U,
14660430141886012803U, 14297932370981794491U, 15550237822687034067U,
16044915679164358049U
};
const uint64_t TETRAMER_TAB[4 * 4 * 4 * 4] = {
6047278271377325800U, 6842100033257738704U, 5716751207778949560U,
5058261232784932554U, 5322212292231585944U, 4955210659836481440U,
6153481158060361672U, 6630136099103187130U, 7683058811908681801U,
7460089081761259377U, 8513615477720831769U, 9169618076073996395U,
8669810821731892908U, 8451393064794886548U, 7271235746105367036U,
7894785163577458318U, 7461575445318369801U, 7680024275870068017U,
8878022265940976985U, 8237757801848291883U, 9060296013225843833U,
8116780716040188737U, 6991106539262573353U, 7521593563379047515U,
6845292839028968616U, 6045914992845185936U, 4775672622745250808U,
5413871935584767114U, 5490367161684853325U, 4695435745326017909U,
5803018666222232861U, 6480400171096490607U, 2381043025085637546U,
3175899973157948562U, 4445879008075678970U, 3807116472585741192U,
4268108881087626714U, 3901072061426881250U, 2847008385469766282U,
3379366782720458232U, 1763336001516006667U, 1540401457157816883U,
342666797974407771U, 983493939256405289U, 771890739233563630U,
553508169276984534U, 1589643033626739902U, 2263336780810576844U,
330722743541775969U, 688712796851212633U, 1742668713148160305U,
1245320973785726531U, 2208596672445898769U, 1422777727841816361U,
152919646732699457U, 826464124477841459U, 4460107693596700864U,
3530055095011467256U, 2403999925630162832U, 2899137386794791138U,
3398970977768160805U, 2464498338584432925U, 3716128830812494197U,
4248337413163712007U, 4264326372183459627U, 3906261395711551507U,
2851952150714671227U, 3383149429014333193U, 2386233046276708699U,
3172117876357805667U, 4441779805226941963U, 3801926588820052345U,
170684860043692426U, 1100671402695403186U, 2226926226858061530U,
1693589575942097320U, 1193606390847620975U, 2128144916583147607U,
876319371625685055U, 382305650241144653U, 1102545060664966090U,
168107437338776818U, 1437989166537956506U, 1915072878734195688U,
1548519783094789562U, 1757891215679916674U, 703889661060612842U,
46092416782165400U, 3908715595921208683U, 4262294307145226835U,
3064498623987880507U, 2585134797421409609U, 2661735585529691022U,
3019760716990469302U, 4055956603131813086U, 3543998858204232620U,
5317339067591416425U, 4959238909506745681U, 6157334207435046201U,
6635009461133220427U, 6051307208490845209U, 6837227221258447649U,
5711490920986878793U, 5054232433096901691U, 8122648135453742280U,
9052599496358476784U, 7782418148093113240U, 7307023562816214250U,
7095314801322056237U, 8029818144085865749U, 9137340041034366333U,
8622472983995947535U, 7806751516869674914U, 7011855109925922970U,
8137690373747335410U, 8757695200062998400U, 8531879593853721042U,
8898947385530005226U, 7700757522090507906U, 7186022138009770480U,
6135219772853324035U, 6358123720871388731U, 5304510851123850835U,
4682089562405882145U, 5182028715320330214U, 5400512630465816798U,
6580751683450298550U, 5923625422568720324U, 13124074928584983660U,
13491146941631638356U, 12293650504952193852U, 11816502978180760654U,
12399079312662682140U, 11604187204414436644U, 12730450818222161228U,
13388307479092468286U, 10327209524901530317U, 9388215691182564853U,
10657868830410829213U, 11137168911054473967U, 11357920004770333736U,
10414374197647485712U, 9306325182584103800U, 9818342344138146826U,
9386341947321596045U, 10329786896059045813U, 11455812913355464669U,
10924692575052363951U, 10984992149858150141U, 10766613702172592581U,
9568826821541020077U, 10208598699842184927U, 13488692655530571308U,
13126106942075820308U, 12072096584926548348U, 12605510244625659406U,
12249677498819492041U, 11882645355480553457U, 13062230760632229785U,
13556163143878539499U, 14178740190036597038U, 14545847390080448022U,
15599559227675164286U, 15067834145139579148U, 16065876409530435422U,
15270949115358734438U, 14000758968863088654U, 14640014089599289212U,
18281953465151117199U, 17342994818563569847U, 16217267316526477535U,
16746698532205467565U, 17255653680509032810U, 16312143059561297490U,
17564497017566543418U, 18061360711745100104U, 16237972021990524133U,
17023861349393640413U, 18293930539975648181U, 17619893477009409223U,
18115916316835994261U, 17757855915011241389U, 16704251839199542725U,
17200966263939144375U, 15576639675766950468U, 15362743113290245500U,
14164544455910714644U, 14841019967217601126U, 14620295210399335585U,
14410818688327658393U, 15446357621659116529U, 16085462927495578755U,
18237799192036655099U, 17294270664133710019U, 16258109964509321387U,
16773410497518403545U, 16657084189963477387U, 16875519862962278067U,
18127020052323321563U, 17507580374969491881U, 14153168177888129370U,
14515696771658964578U, 15624080140268688906U, 15110866744451150200U,
15466708232756051903U, 15833797605570023559U, 14563810316809509103U,
14085706539145691037U, 14517711175708869402U, 14150731501263563810U,
15402451490950456394U, 15899948742203982648U, 15224753927964908906U,
16019597712369578578U, 14983744703118572090U, 14310050713553640776U,
17296865610423782843U, 18235907873078829699U, 17055988043521714923U,
16561000163437350297U, 16340222631939670878U, 17283720110790814822U,
18338064546595415054U, 17805706452459078524U, 10375933128878629561U,
9432369415202180481U, 10612588863825479145U, 11105888166746317467U,
10794790039591648457U, 11013260899437695985U, 9905396050428550041U,
9228014311730625771U, 13154226096333843480U, 13516719503928509216U,
12264699899470662472U, 11768891770841246778U, 11836546934201131773U,
12203601119882644933U, 13328994472388527533U, 12798507759874630367U,
12277767672444305266U, 12068343612890878026U, 13176021535246260258U,
13816435502572994384U, 12705517425460601090U, 13640043170446921274U,
12460006250421962322U, 11929369723008524576U, 10597232027372843475U,
11387585128312430315U, 10351852510211364483U, 9713802769929286129U,
9357917249443839798U, 10143859113470169102U, 11342251114164164710U,
10664720106027613972U
};
} // namespace nthash