Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
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Updated
Nov 19, 2025 - Python
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
PhenoPLIER
Robust and scalable single-cell signature scoring
PhenoPLIER manuscript
This repository contains MSc thesis results using BIONIC (developed by Duncan Forster at The University of Toronto) for the prediction of Arabidopsis's temperature-responsive gene modules.
BADDADAN is a proof of concept which builds ODE models of gene modules to study the response of A. thaliana to stress
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